CABS-dock: c61ff01db74ff66

Project name: c61ff01db74ff66

Status: done

submitted: 2026-01-10 15:02:52, status changed: 2026-01-10 17:59:21

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	LPPTDESIKYTIYNSTGIQIGAYNYMEIGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEEEECCCCEEECCCCEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.562	2.98015	24.2062	103
cluster_2.pdb ( medoid)	22.6702	2.99953	16.5528	68
cluster_3.pdb ( medoid)	18.6258	5.63734	29.1526	105
cluster_4.pdb ( medoid)	17.308	7.91542	32.913	137
cluster_5.pdb ( medoid)	9.90055	15.7567	42.7437	156
cluster_6.pdb ( medoid)	9.26207	16.6269	38.4213	154
cluster_7.pdb ( medoid)	7.21488	12.6128	39.2598	91
cluster_8.pdb ( medoid)	4.9434	16.79	35.9891	83
cluster_9.pdb ( medoid)	4.88415	12.2846	29.0749	60
cluster_10.pdb ( medoid)	2.4649	17.4449	34.1937	43