CABS-dock: c653b406848f458

Project name: c653b406848f458

Status: done

submitted: 2026-01-21 11:09:50, status changed: 2026-01-21 15:55:42

Project settings

Protein sequence(s)	GSLFQLKRETDDLEQWISSEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIIGQERVDNVNAFIERLLIDAGHSEAATTIAEWKDGLNEMWADLLLELIDDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPHRVHTAFERELHLLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACA input pdb
Peptide sequence	TRSMTSEGLRSSGAMAG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	36.1943	3.28781	13.2384	119
cluster_2.pdb ( medoid)	20.5611	7.29533	22.1681	150
cluster_3.pdb ( medoid)	17.1089	5.72803	24.1956	98
cluster_4.pdb ( medoid)	16.4423	8.39299	45.7759	138
cluster_5.pdb ( medoid)	15.219	7.29353	36.3559	111
cluster_6.pdb ( medoid)	13.3402	3.59814	14.6274	48
cluster_7.pdb ( medoid)	12.192	4.75721	10.4784	58
cluster_8.pdb ( medoid)	10.7744	12.3441	40.9829	133
cluster_9.pdb ( medoid)	9.89374	9.29881	43.3879	92
cluster_10.pdb ( medoid)	3.4648	15.2967	45.3785	53