CABS-dock: c778aa7c75c3db

Project name: c778aa7c75c3db

Status: done

submitted: 2025-04-15 09:42:02, status changed: 2025-04-15 11:10:34

Project settings

Protein sequence(s)	RLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR input pdb
Peptide sequence	AIMQAREGWP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.3327	2.86158	13.9201	124
cluster_2.pdb ( medoid)	34.3366	3.93167	22.3514	135
cluster_3.pdb ( medoid)	29.7507	6.15111	24.702	183
cluster_4.pdb ( medoid)	24.395	5.00102	30.4606	122
cluster_5.pdb ( medoid)	17.7134	4.74218	10.0694	84
cluster_6.pdb ( medoid)	12.6311	6.09607	21.3737	77
cluster_7.pdb ( medoid)	8.63703	12.2727	43.2591	106
cluster_8.pdb ( medoid)	8.60822	8.13176	27.4303	70
cluster_9.pdb ( medoid)	8.17771	6.97017	24.8716	57
cluster_10.pdb ( medoid)	3.10786	13.5141	41.6217	42