CABS-dock: COOP_PEPT87

Project name: COOP_PEPT87_TGFBR1

Status: done

submitted: 2026-07-23 11:01:28, status changed: 2026-07-23 16:45:03

Project settings

Protein sequence(s)	TIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS input pdb
Peptide sequence	GDGPAIGID
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	41.6999	3.74102	14.0184	156
cluster_2.pdb ( medoid)	23.1952	6.33751	22.0443	147
cluster_3.pdb ( medoid)	21.0934	9.10239	39.4304	192
cluster_4.pdb ( medoid)	16.1051	8.32037	25.8123	134
cluster_5.pdb ( medoid)	11.2052	7.13952	22.8698	80
cluster_6.pdb ( medoid)	10.701	4.11177	13.9802	44
cluster_7.pdb ( medoid)	7.02014	8.83173	35.212	62
cluster_8.pdb ( medoid)	6.45065	14.1071	38.635	91
cluster_9.pdb ( medoid)	6.41339	8.88766	20.2182	57
cluster_10.pdb ( medoid)	2.54784	14.5221	25.6314	37