CABS-dock: c7c151d219f758d

Project name: c7c151d219f758d

Status: done

submitted: 2026-01-21 15:01:38, status changed: 2026-01-21 20:49:51

Project settings

Protein sequence(s)	GSLFQLKRETDDLEQWISSEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIIGQERVDNVNAFIERLLIDAGHSEAATTIAEWKDGLNEMWADLLLELIDDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPHRVHTAFERELHLLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACA input pdb
Peptide sequence	VPSENDGTFTSNLTGHTKKT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEECCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.7587	5.97856	18.8208	154
cluster_2.pdb ( medoid)	22.0633	6.20942	26.1531	137
cluster_3.pdb ( medoid)	15.9255	11.3026	26.7802	180
cluster_4.pdb ( medoid)	13.0128	5.30249	20.3891	69
cluster_5.pdb ( medoid)	12.3532	5.34274	18.5801	66
cluster_6.pdb ( medoid)	11.5788	9.06833	37.1364	105
cluster_7.pdb ( medoid)	11.5595	10.4675	30.3218	121
cluster_8.pdb ( medoid)	4.44927	17.3062	41.5159	77
cluster_9.pdb ( medoid)	3.37815	16.8731	28.7558	57
cluster_10.pdb ( medoid)	3.37762	10.0662	26.603	34