Protein sequence(s) | MNMNVLVLCFVLSVSAEGLHVDRQVTGCSDHDGEEVYNLDGEEMWFADFIKREGVEPQPPFIDHITYQDGTYQTAEANQQTCKSNLDVVRTAMKDFKIEDEPPSSPMIYTRDAVELGGENTLICHVTGFYPAPVHVYWTKNGVDVTEGTSLNVPYPNTDGSFRQTARLKFIAQQGDVYSCTVSHLALDQSLTKIWDVDVQQPSVGPAVFCGVGLSVGLLGVAAGTFFLIKGNECSMASFILSFSLFFITVCTANGFRYYVVNSCEFNSSKLNDIEFTESYYYNKLEYIRFSSSVGKFVGYTEHGIKNAERWNNGPEVISSRGEKERYCLNNVGVDVESALTNTQTLRQASLCGAPSWQTCMLVCSVFDFYPKRIKVSWQRDGQEVTSDVTSTDELADGDWYYQIHSHLEYMPKSGEKISCVVEHASLSKPLITDWDPSMPESERNKIAIGTSGLILGLTLSLAGFIYYKRKAQGRILVPTN input pdb | ||
Peptide sequence | GNKVNLHSIVPVGQD | ||
Simulation mc cycles | 50 | ||
Peptide secondary structure psipred | CCCCCCCCCEECCCC | ||
Flexible regions |
|
Receptor residue | Peptide residue |
Receptor residue | Peptide residue |
Receptor residue | Peptide residue |
cluster name | cluster density | average rmsd | max rmsd | number of elements |
cluster_1.pdb ( medoid) | 21.3275 | 4.87632 | 22.4238 | 104 |
cluster_2.pdb ( medoid) | 19.0214 | 8.25386 | 40.8812 | 157 |
cluster_3.pdb ( medoid) | 17.1184 | 5.90007 | 17.1209 | 101 |
cluster_4.pdb ( medoid) | 16.2797 | 7.92398 | 32.7729 | 129 |
cluster_5.pdb ( medoid) | 11.3511 | 8.10496 | 44.9482 | 92 |
cluster_6.pdb ( medoid) | 10.6597 | 14.2593 | 62.4971 | 152 |
cluster_7.pdb ( medoid) | 8.53 | 10.9027 | 41.1314 | 93 |
cluster_8.pdb ( medoid) | 7.55305 | 9.40018 | 34.2189 | 71 |
cluster_9.pdb ( medoid) | 7.50164 | 8.79808 | 24.4112 | 66 |
cluster_10.pdb ( medoid) | 2.8469 | 12.2941 | 39.5142 | 35 |