CABS-dock: c7ed27ab6ee1a41

Project name: c7ed27ab6ee1a41

Status: done

submitted: 2026-01-23 11:55:21, status changed: 2026-01-23 21:44:31

Project settings

Protein sequence(s)	ITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPN input pdb
Peptide sequence	KDVNFGTPDSTVQNPQDASKPNDSQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCHHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.0206	5.42991	21.6769	125
cluster_2.pdb ( medoid)	22.5711	5.00639	19.4855	113
cluster_3.pdb ( medoid)	18.4481	6.61316	29.365	122
cluster_4.pdb ( medoid)	16.6031	11.9255	25.6824	198
cluster_5.pdb ( medoid)	15.058	8.43408	19.1878	127
cluster_6.pdb ( medoid)	13.9767	8.08489	19.7474	113
cluster_7.pdb ( medoid)	10.7885	7.50797	15.321	81
cluster_8.pdb ( medoid)	9.71137	5.86941	11.1603	57
cluster_9.pdb ( medoid)	4.66254	6.86321	11.9876	32
cluster_10.pdb ( medoid)	4.46189	7.17185	14.3368	32