CABS-dock: c87b6418b8ae8b0

Project name: c87b6418b8ae8b0

Status: done

submitted: 2025-03-09 21:10:09, status changed: 2025-03-10 01:33:18

Project settings

Protein sequence(s)	IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKKLARMDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ input pdb
Peptide sequence	PSLLKKLLLAPA
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.7271	2.94509	8.43927	117
cluster_2.pdb ( medoid)	28.9951	3.72476	11.4383	108
cluster_3.pdb ( medoid)	28.2092	3.89944	25.0717	110
cluster_4.pdb ( medoid)	20.9917	6.24057	13.8016	131
cluster_5.pdb ( medoid)	20.2861	6.80268	34.3547	138
cluster_6.pdb ( medoid)	13.6882	6.06363	30.8387	83
cluster_7.pdb ( medoid)	12.442	6.91209	17.145	86
cluster_8.pdb ( medoid)	12.3401	7.05021	17.6952	87
cluster_9.pdb ( medoid)	8.40825	6.77906	18.5466	57
cluster_10.pdb ( medoid)	8.06342	10.2934	30.7469	83