CABS-dock: c87be562b2bd6fc

Project name: c87be562b2bd6fc

Status: done

submitted: 2026-02-20 12:45:45, status changed: 2026-02-20 16:41:37

Project settings

Protein sequence(s)	GGTMENLSRRLKVTGDLFDIMSGMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG input pdb
Peptide sequence	CEGENSIPL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.3489	3.43084	21.6576	135
cluster_2.pdb ( medoid)	35.0472	4.65087	19.8161	163
cluster_3.pdb ( medoid)	32.2356	4.49813	26.0458	145
cluster_4.pdb ( medoid)	30.4482	4.59797	21.4759	140
cluster_5.pdb ( medoid)	20.6167	3.92885	7.90832	81
cluster_6.pdb ( medoid)	20.3775	3.82776	14.5804	78
cluster_7.pdb ( medoid)	8.69478	6.78568	18.7558	59
cluster_8.pdb ( medoid)	7.25152	11.5838	29.7431	84
cluster_9.pdb ( medoid)	6.39935	14.2202	43.5248	91
cluster_10.pdb ( medoid)	1.39758	17.1725	35.0475	24