CABS-dock: PD1-HP-h

Project name: PD1-HP-h

Status: done

submitted: 2026-07-13 10:17:53, status changed: 2026-07-13 11:50:06

Project settings

Protein sequence(s)	NPPTFSPALLVVTEGDNATFTCSFSNTSSFVLNWYRMSPSNQTDKLAAFPECRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERRA input pdb
Peptide sequence	HLWHWNKVKFTP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.8765	4.58264	22.2795	114
cluster_2.pdb ( medoid)	23.6603	6.00161	19.591	142
cluster_3.pdb ( medoid)	19.0468	6.30026	21.8643	120
cluster_4.pdb ( medoid)	11.7788	8.57469	22.4987	101
cluster_5.pdb ( medoid)	11.1413	11.2195	25.0069	125
cluster_6.pdb ( medoid)	10.8547	12.8056	27.3016	139
cluster_7.pdb ( medoid)	10.0166	12.7788	25.5311	128
cluster_8.pdb ( medoid)	7.10674	8.30197	25.67	59
cluster_9.pdb ( medoid)	5.54519	9.01683	21.5268	50
cluster_10.pdb ( medoid)	3.69057	5.96114	13.4063	22