CABS-dock: fibra6HUD

Project name: fibra6HUD_CADEMAUNICA

Status: done

submitted: 2025-12-05 18:50:24, status changed: 2025-12-05 21:06:33

Project settings

Protein sequence(s)	NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGG input pdb
Peptide sequence	MLTQPHS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.0078	6.62887	24.6131	126
cluster_2.pdb ( medoid)	17.4981	6.45783	25.1301	113
cluster_3.pdb ( medoid)	12.8718	10.0219	37.3587	129
cluster_4.pdb ( medoid)	12.5821	12.637	30.3264	159
cluster_5.pdb ( medoid)	11.6902	8.29751	25.3653	97
cluster_6.pdb ( medoid)	7.08145	11.7208	26.7255	83
cluster_7.pdb ( medoid)	5.5905	13.7734	30.5469	77
cluster_8.pdb ( medoid)	5.41601	12.3707	27.2866	67
cluster_9.pdb ( medoid)	5.16907	15.0898	29.6324	78
cluster_10.pdb ( medoid)	4.84452	14.6557	32.0582	71