CABS-dock: FcGR1-1

Project name: FcGR1-1

Status: done

submitted: 2026-07-09 02:28:07, status changed: 2026-07-09 07:36:17

Project settings

Protein sequence(s)	KAVIKLQPPWVSSVFQEESVTLHCEVPGSSSTQWFLNGTAIQTSTPTYHITSASEDDSGEYRCQRGLSGRSDPIQLEVHRGWLLLQVSSRVLTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNMSHSGTYHCSGMMGKHRYTSAGISVTVKELFPAPVLTASVTSPLLEGTPVTLSCETKLLLQRPGLQLYFSFYMMGSKTLRGRDTSSEYQILTARRREDSGLYWCEAATEDGNVLKRSPELELQVLG input pdb
Peptide sequence	DLDWVQEFNVELDSDY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHCEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.4283	3.87736	14.9332	149
cluster_2.pdb ( medoid)	25.2608	7.20485	34.0887	182
cluster_3.pdb ( medoid)	24.9832	4.84326	20.1842	121
cluster_4.pdb ( medoid)	23.333	4.71435	21.0218	110
cluster_5.pdb ( medoid)	18.0193	7.21447	45.6613	130
cluster_6.pdb ( medoid)	9.49689	9.79268	32.592	93
cluster_7.pdb ( medoid)	7.48718	8.01369	16.6228	60
cluster_8.pdb ( medoid)	6.79459	8.24185	15.3839	56
cluster_9.pdb ( medoid)	5.08102	10.8246	24.7496	55
cluster_10.pdb ( medoid)	4.00154	10.9958	25.0554	44