CABS-dock: 1507_3.deneme

Project name: 1507_3.deneme_sekans87

Status: done

submitted: 2025-08-02 19:15:32, status changed: 2025-08-04 11:26:44

Project settings

Protein sequence(s)	IRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTIRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKST input pdb
Peptide sequence	QSAGITASSVISQR
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCHHHHHCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.137	7.31566	38.3226	140
cluster_2.pdb ( medoid)	19.0378	12.9742	55.5783	247
cluster_3.pdb ( medoid)	18.7016	5.34715	10.5215	100
cluster_4.pdb ( medoid)	11.0984	8.5598	26.1182	95
cluster_5.pdb ( medoid)	8.52085	14.4352	54.9254	123
cluster_6.pdb ( medoid)	7.90192	8.0993	18.1652	64
cluster_7.pdb ( medoid)	7.54084	13.2611	42.9868	100
cluster_8.pdb ( medoid)	6.1227	12.0862	34.8754	74
cluster_9.pdb ( medoid)	3.43366	11.9406	39.2263	41
cluster_10.pdb ( medoid)	0.636376	25.1424	54.5933	16