CABS-dock: ca40806046d74da

Project name: ca40806046d74da

Status: done

submitted: 2026-01-22 12:58:22, status changed: 2026-01-22 13:41:41

Project settings

Protein sequence(s)	PEITLIIFGVIAGVIGTILLISYGIRRL input pdb
Peptide sequence	ASSDGGVRAAKETGV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.87	4.83186	19.5886	125
cluster_2.pdb ( medoid)	23.7433	5.30676	17.0668	126
cluster_3.pdb ( medoid)	22.2972	5.4267	25.3785	121
cluster_4.pdb ( medoid)	16.8723	7.40858	23.1379	125
cluster_5.pdb ( medoid)	15.7957	9.7495	27.6165	154
cluster_6.pdb ( medoid)	10.439	8.52568	21.0395	89
cluster_7.pdb ( medoid)	7.33057	9.13981	24.0397	67
cluster_8.pdb ( medoid)	6.94943	7.77042	21.3247	54
cluster_9.pdb ( medoid)	6.24388	12.9727	26.2177	81
cluster_10.pdb ( medoid)	4.70825	12.3188	26.4081	58