CABS-dock: ca9209963f70a28

Project name: ca9209963f70a28

Status: done

submitted: 2026-01-22 13:20:29, status changed: 2026-01-22 14:01:42

Project settings

Protein sequence(s)	PEITLIIFGVIAGVIGTILLISYGIRRL input pdb
Peptide sequence	MATPSPTTTSVPEDEKVEES
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.1618	5.64033	22.736	125
cluster_2.pdb ( medoid)	16.2708	11.0013	28.509	179
cluster_3.pdb ( medoid)	13.9361	8.4672	19.9925	118
cluster_4.pdb ( medoid)	10.5366	9.77548	16.2609	103
cluster_5.pdb ( medoid)	9.43806	10.1716	21.0341	96
cluster_6.pdb ( medoid)	8.20266	10.7282	24.6565	88
cluster_7.pdb ( medoid)	7.82537	14.1846	31.4911	111
cluster_8.pdb ( medoid)	6.67559	9.58716	20.3993	64
cluster_9.pdb ( medoid)	5.5968	10.8991	20.6865	61
cluster_10.pdb ( medoid)	4.7792	11.5082	26.04	55