CABS-dock: L3-1

Project name: L3-1

Status: done

submitted: 2026-04-03 02:14:30, status changed: 2026-04-03 07:13:12

Project settings

Protein sequence(s)	TSNAVLTFIYFVVCIIGLCGNTLVIYVILRYAKMKTITNIYILNLAIADELFMLGLPFLAMQVALVHWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWRRPRTAKMITMAVWGVSLLVILPIMIYAGLRSNQWGRSSCTINWPWYTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVGSSKRKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMAISPTPALKGMFDFVVVLTYANSCANPILYAFLSDNFKKSFQNV input pdb
Peptide sequence	WQGTHFPFT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	245.108	0.407983	1.51586	100
cluster_2.pdb ( medoid)	35.7396	2.82599	21.9483	101
cluster_3.pdb ( medoid)	34.8435	3.35787	9.51676	117
cluster_4.pdb ( medoid)	27.2475	4.44078	13.0422	121
cluster_5.pdb ( medoid)	18.2311	4.55267	9.26196	83
cluster_6.pdb ( medoid)	16.7637	7.21799	18.4746	121
cluster_7.pdb ( medoid)	15.4286	9.39812	26.4581	145
cluster_8.pdb ( medoid)	13.8339	5.06005	10.9404	70
cluster_9.pdb ( medoid)	11.2267	7.57125	28.1172	85
cluster_10.pdb ( medoid)	8.86744	6.42801	16.203	57