CABS-dock: cb92ba15dfe5dc1

Project name: cb92ba15dfe5dc1

Status: done

submitted: 2026-04-20 01:40:09, status changed: 2026-04-20 08:54:21

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	EIDDIVLDNNEEDLDTSDEA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCHHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.7605	3.23561	41.1481	106
cluster_2.pdb ( medoid)	26.8982	4.3869	27.0373	118
cluster_3.pdb ( medoid)	23.24	4.2599	20.9751	99
cluster_4.pdb ( medoid)	15.5406	10.553	37.8493	164
cluster_5.pdb ( medoid)	13.3939	10.6765	39.4725	143
cluster_6.pdb ( medoid)	11.3554	9.77512	27.6579	111
cluster_7.pdb ( medoid)	11.34	10.1411	23.9135	115
cluster_8.pdb ( medoid)	7.84341	10.5821	33.2105	83
cluster_9.pdb ( medoid)	3.38012	10.0588	19.2068	34
cluster_10.pdb ( medoid)	2.1885	12.3372	27.4574	27