CABS-dock: cbf38e78ad88582

Project name: cbf38e78ad88582

Status: done

submitted: 2026-01-21 08:11:26, status changed: 2026-01-21 12:53:34

Project settings

Protein sequence(s)	GSLFQLKRETDDLEQWISSEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIIGQERVDNVNAFIERLLIDAGHSEAATTIAEWKDGLNEMWADLLLELIDDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPHRVHTAFERELHLLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACA input pdb
Peptide sequence	NYGNDTIATTGYVGN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.1947	3.19938	35.5111	119
cluster_2.pdb ( medoid)	20.489	5.61277	18.2413	115
cluster_3.pdb ( medoid)	20.2732	5.96848	23.1849	121
cluster_4.pdb ( medoid)	17.884	7.15725	28.5834	128
cluster_5.pdb ( medoid)	16.6349	6.49237	34.2771	108
cluster_6.pdb ( medoid)	14.7658	7.44967	24.62	110
cluster_7.pdb ( medoid)	11.4284	9.97519	36.7737	114
cluster_8.pdb ( medoid)	5.97624	7.52981	15.5507	45
cluster_9.pdb ( medoid)	4.23661	9.44151	19.6286	40
cluster_10.pdb ( medoid)	3.16842	24.3023	60.474	77