CABS-dock: cbfa3ba664208cf

Project name: cbfa3ba664208cf

Status: done

submitted: 2025-12-22 08:25:47, status changed: 2025-12-22 22:42:06

Project settings

Protein sequence(s)	NCVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYCTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAEALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS input pdb
Peptide sequence	LTTSMIVTQNAM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	44.981	2.31209	7.3402	104
cluster_2.pdb ( medoid)	41.7926	2.34491	5.9696	98
cluster_3.pdb ( medoid)	35.7376	3.10597	20.9859	111
cluster_4.pdb ( medoid)	11.1438	5.7431	13.7961	64
cluster_5.pdb ( medoid)	9.88463	9.91438	31.0562	98
cluster_6.pdb ( medoid)	8.85002	3.38982	7.90659	30
cluster_7.pdb ( medoid)	6.60859	6.20405	14.463	41
cluster_8.pdb ( medoid)	6.23733	9.77983	25.7731	61
cluster_9.pdb ( medoid)	4.07232	13.2603	27.2946	54
cluster_10.pdb ( medoid)	3.33084	11.7088	22.6519	39