CABS-dock: YWHAG_ABI3_T225

Project name: YWHAG_ABI3_T225_1433

Status: done

submitted: 2025-04-12 22:38:30, status changed: 2025-04-13 13:02:59

Project settings

Protein sequence(s)	MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN input pdb
Peptide sequence	GVGGAPTPKGQ
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.3342	4.93691	14.5393	209
cluster_2.pdb ( medoid)	39.9502	3.75467	10.7893	150
cluster_3.pdb ( medoid)	34.9707	2.91673	15.4552	102
cluster_4.pdb ( medoid)	33.1567	2.4731	9.34122	82
cluster_5.pdb ( medoid)	22.4754	4.27134	8.29111	96
cluster_6.pdb ( medoid)	16.3991	6.40279	24.9274	105
cluster_7.pdb ( medoid)	16.1037	4.90571	11.2148	79
cluster_8.pdb ( medoid)	10.6944	4.11431	7.66489	44
cluster_9.pdb ( medoid)	8.79117	7.16628	17.0158	63
cluster_10.pdb ( medoid)	8.19907	8.53755	26.5351	70