CABS-dock: p32CF

Project name: p32CF

Status: done

submitted: 2025-12-22 15:17:16, status changed: 2025-12-23 07:58:33

Project settings

Protein sequence(s)	SASWLKKFNDMASAAKGLEWISNKISKFIDWLREKIVPAAREKAEFLTNLKQLPLLENQITNLEQSAASQEDLEAMFGNVSYLAHFCRKFQPLYATEAKRVYVLEKRMNNYMQFKSKHRIEPVCLIIRGSPGTGKSLATGIIARAIADKYHSSVYSLPPDPDHFDGYKQQVVTVMDDLCQNPDGKDMSLFCQMVSTVDFIPPMASLEEKGVSFTSKFVIASTNASNIIVPTVSDSDAIRRRFYMDCDIEVTDSYKTELGRLDAGRAAKLCSENNTANFKRCSPLVCGKAIQLRDRKSKVRYSVDTVVSELIREYNSRSAIGNTIEALFQ input pdb
Peptide sequence	KQCRQELSPRNR
Simulation mc cycles	100
Peptide secondary structure psipred	CCHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	60.5175	1.75156	10.217	106
cluster_2.pdb ( medoid)	33.6636	6.38671	41.6731	215
cluster_3.pdb ( medoid)	19.3401	4.65353	11.0594	90
cluster_4.pdb ( medoid)	12.3351	6.08023	10.4471	75
cluster_5.pdb ( medoid)	7.80875	13.5745	40.8659	106
cluster_6.pdb ( medoid)	7.67194	5.99588	12.0671	46
cluster_7.pdb ( medoid)	5.58492	8.95268	26.0376	50
cluster_8.pdb ( medoid)	3.98718	16.553	44.0897	66
cluster_9.pdb ( medoid)	3.97271	7.04809	12.5403	28
cluster_10.pdb ( medoid)	1.64509	10.9416	16.2392	18