CABS-dock: cd6da6c50a724f7

Project name: cd6da6c50a724f7

Status: done

submitted: 2026-07-16 06:46:33, status changed: 2026-07-16 11:41:36

Project settings

Protein sequence(s)	AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV input pdb
Peptide sequence	DNDFFDSSH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	55.029	3.38004	12.9632	186
cluster_2.pdb ( medoid)	39.7321	2.94472	40.5977	117
cluster_3.pdb ( medoid)	26.2214	4.50014	13.6698	118
cluster_4.pdb ( medoid)	25.3481	3.1166	10.8761	79
cluster_5.pdb ( medoid)	25.0399	6.38979	31.3581	160
cluster_6.pdb ( medoid)	19.8719	5.73676	18.3942	114
cluster_7.pdb ( medoid)	15.4443	4.72666	25.0337	73
cluster_8.pdb ( medoid)	15.0302	2.52824	5.08848	38
cluster_9.pdb ( medoid)	4.58838	11.7688	41.567	54
cluster_10.pdb ( medoid)	3.89719	15.6523	42.4238	61