CABS-dock: cd821d168df5ead

Project name: cd821d168df5ead

Status: done

submitted: 2026-01-21 15:13:06, status changed: 2026-01-21 17:58:23

Project settings

Protein sequence(s)	AFETFIFFVVCLNTVMLVAQTFAEVEIRGEWYFMALDSIFFCIYVVEALLKIIALGLSYFFDFWNNLDFFIMAMAVLDFLLMQTHSFAIYHQS input pdb
Peptide sequence	KKKLFRILKVFKSLRWWF
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHHHHHCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	62.2835	3.30745	22.5787	206
cluster_2.pdb ( medoid)	51.6104	1.84071	5.46088	95
cluster_3.pdb ( medoid)	39.0627	4.83838	12.6018	189
cluster_4.pdb ( medoid)	36.5128	3.31391	8.80117	121
cluster_5.pdb ( medoid)	23.0111	5.77983	24.6584	133
cluster_6.pdb ( medoid)	18.8613	6.68033	15.1274	126
cluster_7.pdb ( medoid)	16.3543	3.54648	8.43343	58
cluster_8.pdb ( medoid)	11.3071	3.62603	9.37628	41
cluster_9.pdb ( medoid)	7.61165	3.15306	8.47387	24
cluster_10.pdb ( medoid)	1.74705	4.00676	6.29669	7