CABS-dock: cd8ec6453c388b0

Project name: cd8ec6453c388b0

Status: done

submitted: 2026-05-04 06:28:57, status changed: 2026-05-04 09:48:14

Project settings

Protein sequence(s)	HMVHITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPL input pdb
Peptide sequence	MHEALHNHYT
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.3866	2.35769	9.96399	74
cluster_2.pdb ( medoid)	23.7987	11.3031	42.3853	269
cluster_3.pdb ( medoid)	17.3724	10.8218	35.9822	188
cluster_4.pdb ( medoid)	15.1535	7.19305	18.1301	109
cluster_5.pdb ( medoid)	13.7748	5.95289	12.5651	82
cluster_6.pdb ( medoid)	10.9999	2.7273	9.99333	30
cluster_7.pdb ( medoid)	10.6835	7.67539	28.8208	82
cluster_8.pdb ( medoid)	10.6716	7.3091	31.3749	78
cluster_9.pdb ( medoid)	3.5896	9.7504	24.8062	35
cluster_10.pdb ( medoid)	2.90625	18.2365	43.5298	53