CABS-dock: 2O2F-FSFPTLPF

Project name: 2O2F-FSFPTLPF

Status: done

submitted: 2025-08-24 08:57:28, status changed: 2025-08-24 11:08:29

Project settings

Protein sequence(s)	GYDNREIVMKYIHYKLSQRGYEWDEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP input pdb
Peptide sequence	FSFPTLPF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.0313	6.67323	40.2543	127
cluster_2.pdb ( medoid)	17.5034	7.59851	33.0385	133
cluster_3.pdb ( medoid)	17.0203	8.22549	31.3282	140
cluster_4.pdb ( medoid)	14.4247	9.28964	37.2061	134
cluster_5.pdb ( medoid)	10.7474	9.02541	33.5267	97
cluster_6.pdb ( medoid)	6.59905	8.78914	19.5841	58
cluster_7.pdb ( medoid)	6.52133	14.7209	36.3005	96
cluster_8.pdb ( medoid)	5.99603	12.5083	33.0489	75
cluster_9.pdb ( medoid)	5.22857	11.6667	27.4852	61
cluster_10.pdb ( medoid)	5.04009	15.6743	37.8659	79