CABS-dock: cde38ce8798c563

Project name: cde38ce8798c563

Status: done

submitted: 2026-02-13 12:19:38, status changed: 2026-02-13 16:00:38

Project settings

Protein sequence(s)	GSSGSSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG input pdb
Peptide sequence	TSETPRV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.7785	2.78284	11.5658	94
cluster_2.pdb ( medoid)	28.5094	6.4891	26.8626	185
cluster_3.pdb ( medoid)	25.6051	4.17886	16.6946	107
cluster_4.pdb ( medoid)	16.7974	9.58484	29.0986	161
cluster_5.pdb ( medoid)	16.3437	8.87192	25.2551	145
cluster_6.pdb ( medoid)	14.2989	5.52489	16.118	79
cluster_7.pdb ( medoid)	12.8206	11.3099	29.1766	145
cluster_8.pdb ( medoid)	5.48592	6.37997	20.2404	35
cluster_9.pdb ( medoid)	3.77858	8.99808	17.2372	34
cluster_10.pdb ( medoid)	1.79456	8.35861	20.0606	15