CABS-dock: P42CF

Project name: P42CF

Status: done

submitted: 2025-12-22 15:18:10, status changed: 2025-12-23 08:08:58

Project settings

Protein sequence(s)	SASWLKKFNDMASAAKGLEWISNKISKFIDWLREKIVPAAREKAEFLTNLKQLPLLENQITNLEQSAASQEDLEAMFGNVSYLAHFCRKFQPLYATEAKRVYVLEKRMNNYMQFKSKHRIEPVCLIIRGSPGTGKSLATGIIARAIADKYHSSVYSLPPDPDHFDGYKQQVVTVMDDLCQNPDGKDMSLFCQMVSTVDFIPPMASLEEKGVSFTSKFVIASTNASNIIVPTVSDSDAIRRRFYMDCDIEVTDSYKTELGRLDAGRAAKLCSENNTANFKRCSPLVCGKAIQLRDRKSKVRYSVDTVVSELIREYNSRSAIGNTIEALFQ input pdb
Peptide sequence	RQELSPRNRERW
Simulation mc cycles	100
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.1967	8.68058	38.4574	184
cluster_2.pdb ( medoid)	17.3797	6.67447	14.1656	116
cluster_3.pdb ( medoid)	16.3233	4.96223	26.944	81
cluster_4.pdb ( medoid)	15.7208	8.58734	40.9391	135
cluster_5.pdb ( medoid)	13.4309	10.6471	33.0542	143
cluster_6.pdb ( medoid)	9.42399	6.36673	13.269	60
cluster_7.pdb ( medoid)	8.45156	8.04585	24.1997	68
cluster_8.pdb ( medoid)	8.33126	4.32107	15.5274	36
cluster_9.pdb ( medoid)	3.03302	6.26439	10.7671	19
cluster_10.pdb ( medoid)	2.9395	19.7313	39.2716	58