CABS-dock: GGA3

Project name: GGA3_VHS-11

Status: done

submitted: 2026-07-09 12:03:52, status changed: 2026-07-09 14:27:13

Project settings

Protein sequence(s)	ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLI input pdb
Peptide sequence	SHWSWSR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.4398	5.10207	29.2755	140
cluster_2.pdb ( medoid)	25.9176	4.24422	21.0413	110
cluster_3.pdb ( medoid)	25.6354	3.47176	12.1079	89
cluster_4.pdb ( medoid)	25.3704	3.82335	8.22468	97
cluster_5.pdb ( medoid)	22.4192	8.83171	25.3252	198
cluster_6.pdb ( medoid)	20.2107	4.15621	14.276	84
cluster_7.pdb ( medoid)	14.6661	5.65931	15.4926	83
cluster_8.pdb ( medoid)	14.2099	5.84101	14.2565	83
cluster_9.pdb ( medoid)	7.9486	8.42915	28.5097	67
cluster_10.pdb ( medoid)	4.56651	10.7303	33.4169	49