CABS-dock: cf2f13c00b9e6ab

Project name: cf2f13c00b9e6ab

Status: done

submitted: 2026-01-16 13:36:27, status changed: 2026-01-17 07:57:40

Project settings

Protein sequence(s)	PTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPKLQFSYVECLLYSFHQLGRKLPDFLTAKAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFPPSYKSTVTLSWKPV input pdb
Peptide sequence	YGRKKRRQRRRPGWMDWAAHKLTGLTSSIP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHCCCCHHHHHHHHHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.2717	2.07168	28.1924	71
cluster_2.pdb ( medoid)	17.556	3.24676	5.81883	57
cluster_3.pdb ( medoid)	16.4475	10.2751	29.6775	169
cluster_4.pdb ( medoid)	14.8493	9.15866	39.1448	136
cluster_5.pdb ( medoid)	12.7601	8.15038	26.8816	104
cluster_6.pdb ( medoid)	10.0038	8.99655	32.0966	90
cluster_7.pdb ( medoid)	8.23595	9.47068	54.3585	78
cluster_8.pdb ( medoid)	7.18421	10.7179	22.0049	77
cluster_9.pdb ( medoid)	6.88813	10.3076	23.1605	71
cluster_10.pdb ( medoid)	2.84859	16.4994	44.462	47