CABS-dock: 1507_3.deneme

Project name: 1507_3.deneme_sekans88

Status: done

submitted: 2025-08-02 19:17:23, status changed: 2025-08-04 11:05:34

Project settings

Protein sequence(s)	IRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTIRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKST input pdb
Peptide sequence	SQSAGITASSVISQR
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCCHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.9252	3.34525	11.6718	70
cluster_2.pdb ( medoid)	18.7889	8.14311	38.9734	153
cluster_3.pdb ( medoid)	16.2824	8.16832	44.8207	133
cluster_4.pdb ( medoid)	16.1436	5.20331	27.4675	84
cluster_5.pdb ( medoid)	12.5601	10.7484	41.5951	135
cluster_6.pdb ( medoid)	7.06921	15.8434	50.1173	112
cluster_7.pdb ( medoid)	6.42943	11.8206	45.0769	76
cluster_8.pdb ( medoid)	4.84095	13.2206	41.8056	64
cluster_9.pdb ( medoid)	4.30727	13.6978	44.4508	59
cluster_10.pdb ( medoid)	2.72904	21.9858	62.1138	60