CABS-dock: cfa58132896fa24

Project name: cfa58132896fa24

Status: done

submitted: 2026-01-12 17:36:16, status changed: 2026-01-13 07:27:04

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	KVGAGEVFDGHGATFTADKSMGNGD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCEEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.542	3.70344	19.8755	102
cluster_2.pdb ( medoid)	18.2113	6.86388	29.4483	125
cluster_3.pdb ( medoid)	17.0178	9.81327	39.8852	167
cluster_4.pdb ( medoid)	12.4265	7.40355	27.8946	92
cluster_5.pdb ( medoid)	11.3929	9.04074	29.3625	103
cluster_6.pdb ( medoid)	11.2095	9.27784	26.1977	104
cluster_7.pdb ( medoid)	7.96054	10.9289	24.6832	87
cluster_8.pdb ( medoid)	3.94132	9.64143	20.3638	38
cluster_9.pdb ( medoid)	2.77052	17.6862	28.9873	49
cluster_10.pdb ( medoid)	1.90847	19.3873	42.8002	37