CABS-dock: 1M17-FSFPTLPF

Project name: 1M17-FSFPTLPF

Status: done

submitted: 2025-08-24 09:05:24, status changed: 2025-08-24 14:48:31

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	FSFPTLPF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.9287	3.21262	18.6693	109
cluster_2.pdb ( medoid)	29.1259	3.12437	6.78418	91
cluster_3.pdb ( medoid)	17.1183	6.95162	28.5356	119
cluster_4.pdb ( medoid)	16.638	6.43105	18.3228	107
cluster_5.pdb ( medoid)	15.7929	10.701	29.0992	169
cluster_6.pdb ( medoid)	14.9555	7.42202	20.8415	111
cluster_7.pdb ( medoid)	14.3649	8.14484	24.0249	117
cluster_8.pdb ( medoid)	13.039	5.36849	14.7959	70
cluster_9.pdb ( medoid)	6.54163	6.72615	17.706	44
cluster_10.pdb ( medoid)	6.08657	10.3507	28.2776	63