CABS-dock: WLLAVSNVF-AM

Project name: WLLAVSNVF-AM

Status: done

submitted: 2025-07-02 10:54:48, status changed: 2025-07-02 21:15:17

Project settings

Protein sequence(s)	EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLKHWEFDDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRA input pdb
Peptide sequence	WLLAVSNVF
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	72.7483	2.98289	31.0841	217
cluster_2.pdb ( medoid)	36.6721	5.97184	26.3359	219
cluster_3.pdb ( medoid)	22.8601	6.5179	29.8977	149
cluster_4.pdb ( medoid)	11.9333	10.4749	39.9906	125
cluster_5.pdb ( medoid)	9.66431	10.8647	38.4996	105
cluster_6.pdb ( medoid)	7.75567	8.76778	22.0261	68
cluster_7.pdb ( medoid)	5.11242	8.6065	25.2276	44
cluster_8.pdb ( medoid)	2.45201	13.0505	30.5284	32
cluster_9.pdb ( medoid)	1.58693	14.4934	33.6415	23
cluster_10.pdb ( medoid)	1.25826	14.3055	33.6553	18