CABS-dock: d008d073fbeaf89

Project name: d008d073fbeaf89

Status: done

submitted: 2025-11-13 02:14:39, status changed: 2025-11-13 05:29:07

Project settings

Protein sequence(s)	MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA input pdb
Peptide sequence	TTDHISAAGPW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.5383	4.28494	28.3493	118
cluster_2.pdb ( medoid)	16.2673	10.0816	44.0008	164
cluster_3.pdb ( medoid)	13.2576	8.97598	50.0818	119
cluster_4.pdb ( medoid)	11.1618	9.76543	27.715	109
cluster_5.pdb ( medoid)	8.10349	15.7957	48.8991	128
cluster_6.pdb ( medoid)	5.96793	19.7723	48.6024	118
cluster_7.pdb ( medoid)	4.89575	10.4172	26.617	51
cluster_8.pdb ( medoid)	4.39885	19.5506	52.4538	86
cluster_9.pdb ( medoid)	3.90204	11.7887	29.2405	46
cluster_10.pdb ( medoid)	3.51966	17.3312	39.7721	61