CABS-dock: d0363f9125c8c49

Project name: d0363f9125c8c49

Status: done

submitted: 2026-01-12 17:41:05, status changed: 2026-01-13 06:57:29

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	RTNGGKQFDDMSIELNGIEANHGKF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCEEEEECCEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.0928	3.02181	6.00054	100
cluster_2.pdb ( medoid)	20.7122	6.08337	28.4038	126
cluster_3.pdb ( medoid)	20.575	3.40218	7.80821	70
cluster_4.pdb ( medoid)	16.3122	8.64384	21.801	141
cluster_5.pdb ( medoid)	15.0898	7.81984	24.8062	118
cluster_6.pdb ( medoid)	9.36757	12.7034	25.6242	119
cluster_7.pdb ( medoid)	8.87246	6.64979	18.1288	59
cluster_8.pdb ( medoid)	4.73626	4.64501	12.481	22
cluster_9.pdb ( medoid)	2.80147	12.4934	24.6624	35
cluster_10.pdb ( medoid)	1.69019	5.91648	17.7576	10