CABS-dock: 251229 IgV_Only

Project name: 251229 IgV_Only_5

Status: done

submitted: 2025-12-29 08:38:55, status changed: 2025-12-29 11:47:42

Project settings

Protein sequence(s)	AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA input pdb
Peptide sequence	WHRSYYTWNLNT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEECEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.6665	3.52449	13.4964	168
cluster_2.pdb ( medoid)	24.1969	7.60427	19.9577	184
cluster_3.pdb ( medoid)	24.1374	4.64011	12.6481	112
cluster_4.pdb ( medoid)	23.1797	4.78867	13.3422	111
cluster_5.pdb ( medoid)	14.7153	7.95091	17.8099	117
cluster_6.pdb ( medoid)	13.4726	7.12556	19.8338	96
cluster_7.pdb ( medoid)	10.1101	7.61611	18.1789	77
cluster_8.pdb ( medoid)	8.93635	6.93796	15.8642	62
cluster_9.pdb ( medoid)	8.22046	4.98756	14.4999	41
cluster_10.pdb ( medoid)	5.51895	5.7982	13.6276	32