CABS-dock: EP5A CMH1

Project name: EP5A CMH1

Status: done

submitted: 2025-11-25 10:55:09, status changed: 2025-11-25 17:08:42

Project settings

Protein sequence(s)	GSHSMRYFYTAMSRPGRGEPRFIIAVGYVDDTQFVRFDSDAASSPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYREESLRNLRRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRRYLENGKETLQRADPPKTHVTHHPVSDDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP input pdb
Peptide sequence	IPANTTIPF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	158.532	0.630789	1.49738	100
cluster_2.pdb ( medoid)	22.0641	6.93434	16.6558	153
cluster_3.pdb ( medoid)	19.3212	6.88362	27.5766	133
cluster_4.pdb ( medoid)	19.0785	8.85814	22.1095	169
cluster_5.pdb ( medoid)	18.2371	6.19615	17.8475	113
cluster_6.pdb ( medoid)	14.4178	8.53109	17.2729	123
cluster_7.pdb ( medoid)	9.45441	6.55778	17.8621	62
cluster_8.pdb ( medoid)	9.17446	6.64889	19.5502	61
cluster_9.pdb ( medoid)	6.21912	7.87893	18.0284	49
cluster_10.pdb ( medoid)	4.57875	8.08081	22.0972	37