CABS-dock: Ranl

Project name: Ranl_05

Status: done

submitted: 2026-04-04 14:14:04, status changed: 2026-04-04 18:03:48

Project settings

Protein sequence(s)	GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	QYCSCGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.7948	6.70259	32.7042	193
cluster_2.pdb ( medoid)	18.9133	6.39761	21.9641	121
cluster_3.pdb ( medoid)	17.2848	5.14903	25.2304	89
cluster_4.pdb ( medoid)	16.7746	4.35182	22.7025	73
cluster_5.pdb ( medoid)	11.847	4.64253	11.5596	55
cluster_6.pdb ( medoid)	8.05405	7.07719	24.8402	57
cluster_7.pdb ( medoid)	7.86272	14.626	35.4104	115
cluster_8.pdb ( medoid)	7.17458	19.0952	42.6443	137
cluster_9.pdb ( medoid)	6.63126	11.3101	36.7816	75
cluster_10.pdb ( medoid)	4.60995	18.4384	41.9512	85