CABS-dock: 2jsb

Project name: 2jsb

Status: done

submitted: 2025-12-12 16:02:06, status changed: 2025-12-12 19:12:33

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	RWCVYAYVRVRGVLVRYRRCW
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEEEEEEEEEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.5851	5.58658	36.6352	115
cluster_2.pdb ( medoid)	17.9808	6.06204	26.766	109
cluster_3.pdb ( medoid)	16.8647	9.72447	37.9599	164
cluster_4.pdb ( medoid)	14.7342	5.56529	27.292	82
cluster_5.pdb ( medoid)	9.29907	19.1417	53.0662	178
cluster_6.pdb ( medoid)	7.79282	13.3456	52.4657	104
cluster_7.pdb ( medoid)	7.44755	7.65352	20.9915	57
cluster_8.pdb ( medoid)	5.1489	16.7026	43.6385	86
cluster_9.pdb ( medoid)	4.43093	11.2843	30.3452	50
cluster_10.pdb ( medoid)	2.28914	24.0264	50.7383	55