CABS-dock: MAD20

Project name: MAD20_USP7

Status: done

submitted: 2026-01-12 18:02:39, status changed: 2026-01-12 23:14:01

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW input pdb
Peptide sequence	NEGTSGTAVTTSTPGSSGSVTSGGSVASVA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCEEEEECCCCCCCEECCCCCEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	45.2527	2.2761	29.9621	103
cluster_2.pdb ( medoid)	18.2507	6.24633	27.1191	114
cluster_3.pdb ( medoid)	18.1305	13.1822	38.3783	239
cluster_4.pdb ( medoid)	17.0401	5.98587	30.4543	102
cluster_5.pdb ( medoid)	9.61773	9.77362	27.72	94
cluster_6.pdb ( medoid)	7.58951	14.3619	30.3198	109
cluster_7.pdb ( medoid)	5.54108	11.5501	28.3841	64
cluster_8.pdb ( medoid)	4.51581	15.5011	29.5803	70
cluster_9.pdb ( medoid)	4.01531	16.188	29.4524	65
cluster_10.pdb ( medoid)	3.0658	13.0472	31.8613	40