CABS-dock: COOP_PEPT58

Project name: COOP_PEPT58_FAK

Status: done

submitted: 2026-07-23 11:01:20, status changed: 2026-07-23 16:07:45

Project settings

Protein sequence(s)	STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ input pdb
Peptide sequence	KVCPPHCIL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.0294	9.41242	36.0817	245
cluster_2.pdb ( medoid)	18.3471	6.32252	26.9003	116
cluster_3.pdb ( medoid)	17.2047	6.10298	18.5478	105
cluster_4.pdb ( medoid)	16.1306	12.3368	39.2949	199
cluster_5.pdb ( medoid)	12.9636	6.17113	16.6743	80
cluster_6.pdb ( medoid)	10.2	3.92155	11.4386	40
cluster_7.pdb ( medoid)	9.00161	7.22093	17.7571	65
cluster_8.pdb ( medoid)	8.78901	6.59915	14.3944	58
cluster_9.pdb ( medoid)	7.38421	6.90662	21.6658	51
cluster_10.pdb ( medoid)	3.35313	12.2274	33.0691	41