CABS-dock: d3b677aff481a6f

Project name: d3b677aff481a6f

Status: done

submitted: 2026-05-01 02:48:55, status changed: 2026-05-01 09:32:53

Project settings

Protein sequence(s)	NLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGL input pdb
Peptide sequence	VGAVAALR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.2866	4.75362	53.4478	182
cluster_2.pdb ( medoid)	18.3831	6.52772	48.0691	120
cluster_3.pdb ( medoid)	17.7152	5.02392	12.2006	89
cluster_4.pdb ( medoid)	16.4594	8.68806	41.1766	143
cluster_5.pdb ( medoid)	15.8852	12.7792	50.5315	203
cluster_6.pdb ( medoid)	15.5293	4.50761	40.0561	70
cluster_7.pdb ( medoid)	10.247	4.68428	11.5477	48
cluster_8.pdb ( medoid)	6.67476	7.79054	38.7125	52
cluster_9.pdb ( medoid)	4.9224	7.11036	17.9588	35
cluster_10.pdb ( medoid)	3.58345	16.1855	46.4521	58