CABS-dock: PEPTIDE15

Project name: PEPTIDE15

Status: done

submitted: 2025-07-02 09:38:38, status changed: 2025-07-02 12:13:42

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FFNK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.1048	4.19857	13.6202	118
cluster_2.pdb ( medoid)	17.2561	7.30179	38.2558	126
cluster_3.pdb ( medoid)	14.6767	7.69929	23.3707	113
cluster_4.pdb ( medoid)	13.3022	9.99831	30.1008	133
cluster_5.pdb ( medoid)	10.4304	7.09463	21.3902	74
cluster_6.pdb ( medoid)	10.1601	12.303	35.6736	125
cluster_7.pdb ( medoid)	9.98703	7.00909	22.3934	70
cluster_8.pdb ( medoid)	9.93559	10.5681	34.9933	105
cluster_9.pdb ( medoid)	8.59606	7.21261	23.8813	62
cluster_10.pdb ( medoid)	8.55408	8.65084	21.8116	74