CABS-dock: CLT1 w FN-III(fibronectin part)

Project name: CLT1 w FN-III(fibronectin part)

Status: done

submitted: 2026-07-08 11:21:09, status changed: 2026-07-08 12:42:20

Project settings

Protein sequence(s)	GSHMGTTTAPDAPPDPTVDQVDDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYNITIYAVEENQESTPVVIQQETTGTPRSDGT input pdb
Peptide sequence	CGLIIQKNEC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.6526	2.09089	19.7365	108
cluster_2.pdb ( medoid)	34.8444	3.55868	18.7735	124
cluster_3.pdb ( medoid)	29.1993	4.76038	25.4776	139
cluster_4.pdb ( medoid)	19.6775	7.21637	19.6841	142
cluster_5.pdb ( medoid)	18.2847	7.9848	22.416	146
cluster_6.pdb ( medoid)	13.5221	7.54323	21.925	102
cluster_7.pdb ( medoid)	10.927	8.60256	23.5475	94
cluster_8.pdb ( medoid)	7.1806	8.49511	18.6828	61
cluster_9.pdb ( medoid)	6.73287	8.61446	33.2393	58
cluster_10.pdb ( medoid)	2.02291	12.8528	28.5278	26