CABS-dock: d5050aa905e475c

Project name: d5050aa905e475c

Status: done

submitted: 2026-07-01 11:02:15, status changed: 2026-07-01 20:21:44

Project settings

Protein sequence(s)	FIFHKVLGKGSFGKVLLGELKGRGEYFAIKALKKDVVLIDDDVECTMVEKRVLTLAAENPFLTHLICTFQTKDHLFFVMEFLNGGDLMYHIQDKGRFELYRATFYAAEIMCGLQFLHSKGIIYRDLKLDNVLLDRDGHIKIADFGMCKENIFGESRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFEREPTKRLGVTGNIKIHPFFKTINWTLLEKRRLEPPFRPKVKSPRDYSNFDQEFLNEKARLSYSDKNLIDSMDQSAFAGFSFVNPKFEHLLED input pdb
Peptide sequence	RQLSSGVSEIRHTAD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.8429	2.15288	11.6837	103
cluster_2.pdb ( medoid)	43.6185	2.49894	9.17758	109
cluster_3.pdb ( medoid)	36.2271	5.32751	13.892	193
cluster_4.pdb ( medoid)	27.6034	6.01375	20.1377	166
cluster_5.pdb ( medoid)	26.1998	1.33589	5.46119	35
cluster_6.pdb ( medoid)	20.3754	3.4846	14.5758	71
cluster_7.pdb ( medoid)	16.4892	4.97296	10.1308	82
cluster_8.pdb ( medoid)	15.5755	6.35612	25.0343	99
cluster_9.pdb ( medoid)	11.9733	8.35193	21.1304	100
cluster_10.pdb ( medoid)	4.422	9.49797	17.808	42