CABS-dock: d55032309e5d4c3

Project name: d55032309e5d4c3

Status: done

submitted: 2026-01-22 13:12:00, status changed: 2026-01-22 17:10:18

Project settings

Protein sequence(s)	EASRQQQRRFNTSSIRDFEFWLSEAETLLAMKDQQARDLASSAGNLLKKHQLLERREMLAREDALKDLNTLAEDDLLSSSGTTFNVDQIVKKKDNNVNKRFLNVQELAAAHHEKLKEAYALFQFFQDLDDEESWIEEKLIRVSSQDYGRDLQGVQNLLKKHKRLEGELVAHEEPAIQNVLDMAEKLKDKAAVGQEEIQLRLAQFVEHWEEKLKELAKARGLKLEESLEYLQFMQ input pdb
Peptide sequence	EVNGDFIQKEEDTEQE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.7091	3.77739	20.7474	116
cluster_2.pdb ( medoid)	26.6826	3.8602	9.78682	103
cluster_3.pdb ( medoid)	14.1376	6.71968	22.0963	95
cluster_4.pdb ( medoid)	13.5197	6.509	19.8487	88
cluster_5.pdb ( medoid)	12.9621	4.70601	9.90611	61
cluster_6.pdb ( medoid)	10.483	6.86827	45.3798	72
cluster_7.pdb ( medoid)	9.68777	7.32883	19.6191	71
cluster_8.pdb ( medoid)	8.13669	11.061	21.5482	90
cluster_9.pdb ( medoid)	4.59855	11.0904	28.8764	51
cluster_10.pdb ( medoid)	3.88752	13.6334	25.9855	53