CABS-dock: 6CO4

Project name: 6CO4

Status: done

submitted: 2026-03-19 19:52:41, status changed: 2026-03-19 22:21:54

Project settings

Protein sequence(s)	NKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPP input pdb
Peptide sequence	GPGSQEPEPPEPFEYIDD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.5238	4.55711	14.1237	171
cluster_2.pdb ( medoid)	28.1063	2.49055	29.358	70
cluster_3.pdb ( medoid)	21.6884	4.61076	11.114	100
cluster_4.pdb ( medoid)	21.5764	6.11778	17.8582	132
cluster_5.pdb ( medoid)	17.2045	7.78865	21.3869	134
cluster_6.pdb ( medoid)	14.7972	7.02835	13.9563	104
cluster_7.pdb ( medoid)	13.2437	7.32422	14.7811	97
cluster_8.pdb ( medoid)	12.3386	8.67201	17.714	107
cluster_9.pdb ( medoid)	8.75291	3.88442	18.202	34
cluster_10.pdb ( medoid)	4.9113	10.3842	19.2212	51