CABS-dock: d69b5f2ac3b98c5

Project name: d69b5f2ac3b98c5

Status: done

submitted: 2025-04-22 12:16:46, status changed: 2025-04-22 18:49:30

Project settings

Protein sequence(s)	AESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDSFFKWDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG input pdb
Peptide sequence	YNRSTSSTIYDSMGQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.4326	7.0382	21.6069	179
cluster_2.pdb ( medoid)	22.5133	5.77437	12.3977	130
cluster_3.pdb ( medoid)	18.9042	7.56447	30.2027	143
cluster_4.pdb ( medoid)	17.9287	6.63741	27.9999	119
cluster_5.pdb ( medoid)	17.8493	4.08979	10.4189	73
cluster_6.pdb ( medoid)	17.4387	7.11061	24.9144	124
cluster_7.pdb ( medoid)	13.8648	7.71738	31.1861	107
cluster_8.pdb ( medoid)	10.0915	6.93656	19.2333	70
cluster_9.pdb ( medoid)	8.08525	4.45255	10.9909	36
cluster_10.pdb ( medoid)	1.76118	10.7882	26.0982	19