CABS-dock: d6acfd2ed41d58

Project name: d6acfd2ed41d58

Status: done

submitted: 2026-05-04 11:24:30, status changed: 2026-05-04 20:40:50

Project settings

Protein sequence(s)	GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM input pdb
Peptide sequence	YPWDRIEEV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.5064	2.87314	11.3863	125
cluster_2.pdb ( medoid)	32.6457	4.87048	26.2009	159
cluster_3.pdb ( medoid)	30.9135	4.62581	26.8916	143
cluster_4.pdb ( medoid)	20.3039	7.97876	31.8951	162
cluster_5.pdb ( medoid)	17.6535	4.64497	19.7204	82
cluster_6.pdb ( medoid)	14.6055	7.73684	30.2771	113
cluster_7.pdb ( medoid)	12.0039	7.08106	31.7355	85
cluster_8.pdb ( medoid)	9.29376	8.93073	22.8424	83
cluster_9.pdb ( medoid)	4.55047	5.49394	11.7307	25
cluster_10.pdb ( medoid)	2.83637	8.10895	17.5727	23