CABS-dock: subunit_1-15

Project name: subunit_1-15_tbev

Status: done

submitted: 2025-11-13 10:22:04, status changed: 2025-11-13 22:44:33

Project settings

Protein sequence(s)	DVGCAVDTERMELRCGEGLVVWREVSEWYDNYAYYPETPGALASAIKETFEEGSCGVVPQNRLEMAMWRSSVTELNLALAEGEANLTVMVDKFDPTDYRGGVPGLLKKGKDIKVSWKSWGHSMIWSIPEAPRRFMVGTEGQSECPLERRKTGVFTVAEFGVGLRTKVFLDFRQEPTHECDTGVMGAAVKNGMAIHTDQSLWMRSMKNDTGTYIVELLVTDLRNCSWPASHTIDNADVVDSELFLPASLAGPRSWYNRIPGYSEQVKGPWKHTPIRVIREECPGTTVTINAKCDKRGASVRSTTESGKVIPEWCCRACTMPPVTFRTGTDCWYAMEIRPVHDQGGLVRSMVVA input pdb
Peptide sequence	DMGCAIDANRMELRC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEECCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.3204	6.49629	26.0683	145
cluster_2.pdb ( medoid)	16.0226	8.30076	32.6145	133
cluster_3.pdb ( medoid)	15.4294	9.6569	33.5984	149
cluster_4.pdb ( medoid)	8.23429	12.5087	25.6482	103
cluster_5.pdb ( medoid)	7.69226	12.2201	26.3483	94
cluster_6.pdb ( medoid)	6.66545	9.00164	25.0115	60
cluster_7.pdb ( medoid)	5.96625	14.7496	41.7428	88
cluster_8.pdb ( medoid)	5.72321	11.8814	28.0552	68
cluster_9.pdb ( medoid)	4.7547	16.6151	42.122	79
cluster_10.pdb ( medoid)	4.52191	17.9128	50.9409	81